Basic Information
VIS ID
TVIS44019809
Fusion event
HTLV-1-LOC101927609 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
17308177/17268553 (Hg38)
End
17308177/17268553 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927609
Nearest miRNA
hsa-mir-339/Upstream/10201508; hsa-mir-10399/Downstream/858667;
Nearest TSS
ENST00000635602/Upstream/136363; ENST00000475440/Downstream/12750;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/417090, chr7-CpG: 107/Downstream/30075
Nearby gene
AHR(+30099) ;
Upstream sequence
taaacctctttattttgtaaattgcccagtctcaggtatatctttatcagcagcatgagaacaaatacaatgtgctttatatatttagatgctccaatgt
Downstream sequence
tagatgcatatatatttacaattgttatattctcttaaagaattgacttatcattacataaagatactcattgtctcttataacagtttttgacttaaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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