Basic Information
VIS ID
TVIS44019857
Fusion event
HTLV-1-LOC100133177 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
51457081/51389384 (Hg38)
End
51457081/51389384 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100133177
Nearest miRNA
hsa-mir-1183/Upstream/6507584; hsa-mir-10399/Downstream/5566401;
Nearest TSS
ENST00000635602/Upstream/72566; ENST00000414409/Downstream/224867;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/247, chr7-CpG: 59/Downstream/884388
Nearby gene
COBL(-72566) ;
Upstream sequence
GCTGGGCGTGGAGAGTCCGCTGTGAGGCAGAGGCTGGGCCTGTGCAGGCCTTCAGGAGGCAGGAGGCCGGGCCTGGAGAGGCTGACTGGAGGTCAAGTTC
Downstream sequence
TGGGCCTGCAGAGGCCGCCGAAAGTCAAAAGTGGGGCCTGGGAAGGCCGCCGGGAGGCATGAGCTGGGCTGGGCTGAAAGAGGCCACTGGGAGGCAGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate