Basic Information
VIS ID
TVIS44019875
Fusion event
HTLV-1-AUTS2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
69330194/69865208 (Hg38)
End
69330194/69865208 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
AUTS2
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-222-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/2750811; hsa-mir-10399/Downstream/1442464;
Nearest TSS
ENST00000635602/Upstream/40637; ENST00000475660/Downstream/269348;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/265157, chr7-CpG: 64/Downstream/730640
Upstream sequence
TTTTTTTTTTTAAGGGCGTTGTGTATTTAGACTGTGATATTCTGTGCACTGCTTTGCTTGAAGTGAGTGATGGCTGCGACTAAGAAGGCAGCAAGTGGGG
Downstream sequence
AGTGGGAGTTTGGGGAGGTGGAAAAGGGTTTCTGTGAGACAATATTGGTTTGTCTGGTCTTTGGGCCTGGGCTACACACATGCCCTTTGACACTTATGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate