Basic Information
VIS ID
TVIS44019878
Fusion event
HTLV-1-AUTS2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
70017361/70552375 (Hg38)
End
70017361/70552375 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
AUTS2
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-222-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3437978; hsa-mir-10399/Downstream/755297;
Nearest TSS
ENST00000635602/Upstream/235459; ENST00000489774/Downstream/43710;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/952324, chr7-CpG: 64/Downstream/43473
Upstream sequence
TTTTCCCTCCCAGAAGCTAAGAAAACCATCTGTGAGAACCTGTTTGCATGTTTGTTTTCTACAATAAAATGCAAAATACTTCTTCCTGTTAGCGGATTAT
Downstream sequence
ACCATATGTCTCTCCCTGTAACAAAATCAGCATGTTTATTAATGAACCCAATCAGAGGCAAAGATTTAGAAAGATTTAAGGAACTGAATTTTCCATTCAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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