Basic Information
VIS ID
TVIS44019932
Fusion event
HTLV-1-CCDC26 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
130571066/129558820 (Hg38)
End
130571066/129558820 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
CCDC26
Nearest miRNA
hsa-mir-1204/Upstream/74678; hsa-mir-10400/Downstream/449514;
Nearest TSS
ENST00000518652/Upstream/142871; ENST00000524100/Downstream/16171;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1708842, chr8-CpG: 122/Downstream/380306
Upstream sequence
ggacacatgactagaaaatggaggagtaagaactttaaccaaggtcaggctaactcttcctaggaccttttccactgggccaTAAACCATAAAAATGTTT
Downstream sequence
AATTTCAATTTTGATAACATTGTGATTCATTGCACTATCCCTGACCTCCACATCCCGAGATCTTTTTcccctagacatcagggacaaactcttaagcatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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