Basic Information
VIS ID
TVIS44019935
Fusion event
HTLV-1-LOC107986976 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
132895728/131883481 (Hg38)
End
132895728/131883481 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986976
Nearest miRNA
hsa-mir-1204/Upstream/1875028; hsa-mir-10400/Downstream/1163000;
Nearest TSS
ENST00000518652/Upstream/573009; ENST00000520362/Downstream/20607;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/840978, chr8-CpG: 92/Downstream/20522
Nearby gene
EFR3A(+20628) ;
Upstream sequence
gccttgctgagctgcggtgggctcggcccagttcgaggttccctggccactttgtttacctacttatgcctcagcaatggcagacagccctcccccagcc
Downstream sequence
aggctgccacctcacagttcgatctcagactgctgcgctagcaatgaccaaggctccatgggcgtgggacctgccaagccatgcacgggatataatctcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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