Basic Information
VIS ID
TVIS44019938
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
13607094/13749585 (Hg38)
End
13607094/13749585 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/1022281; hsa-mir-10400/Downstream/1103853;
Nearest TSS
ENST00000518652/Upstream/144975; ENST00000527110/Downstream/99524;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/472794, chr8-CpG: 87/Downstream/1487143
Nearby gene
C8orf48(No orient, 181297)
Upstream sequence
TGTTTTcatgatgtatgcactctccattacctcttatttcatttcccactagtttcccttactctttctgtgctaggtacactggtctttgtgAATACTT
Downstream sequence
TGCAATTGTGCTGGTGATAACTATAGCAGAGACAGGATAATAGTGCAAAGAATTAACTTATTCAGAACAAAATAAACTACCAAATATTAAGACTGAGGTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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