VISDB Viral Integration Site DataBase

VIS ID

TVIS44019955

Fusion event

HTLV-1-MYOM2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr8

Cytoband

p23.3

Reference genome

Start

End

2031080/2082948 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4684-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-3675-3p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6771-3p ; hsa-mir-1227-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-204-3p ; hsa-mir-2467-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3165 ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3665 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3714 ; hsa-mir-377-5p ; hsa-mir-3913-5p ; hsa-mir-4257 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4646-5p ; hsa-mir-4728-5p ; hsa-mir-4736 ; hsa-mir-4747-5p ; hsa-mir-4768-3p ; hsa-mir-490-3p ; hsa-mir-5196-5p ; hsa-mir-544b ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6513-5p ; hsa-mir-6516-5p ; hsa-mir-6765-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6828-5p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7162-3p ; hsa-mir-7851-3p ; hsa-mir-887-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-3674/Upstream/6308; hsa-mir-10400/Downstream/4539176;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/26932, chr8-CpG: 18/Downstream/2508

Upstream sequence

AAATAAACTCGGTGTTTCATTTACTTAGAGAAAAATCTCCTGGGGAGGTTGTAGTTTCCTTAGGTGGATGagggaacaaaatacagaagttggaaccaga

Downstream sequence

agacctaagcctcgaccccagttcagccacccagtagctgtgcgatcttaggaaagtggtatgtttttatgagatcaatttctggatttttaagtggagg