Basic Information
VIS ID
TVIS44019993
Fusion event
HTLV-1-LOC105375817 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
48013385/47101762 (Hg38)
End
48013385/47101762 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375817
Nearest miRNA
hsa-mir-124-1/Upstream/4205487; hsa-mir-10400/Downstream/14613026;
Nearest TSS
ENST00000518652/Upstream/167316; ENST00000528139/Downstream/89010;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/146617, chr8-CpG: 24/Downstream/31202
Nearby gene
LOC100287846(+87545) ;
Upstream sequence
aaagacaaaatacacaatacaatgattttcaagaacatggactgcaggtaatgaagacgatgatccctgtaagacaggaaacaaatgaagtaagatttac
Downstream sequence
aaacaccccagcaaactgactggacaaagtttccaggccatgacaacaggagaaaataaaattgaggtagagtccgccagattccctgaattggaacaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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