Basic Information
VIS ID
TVIS44020011
Fusion event
HTLV-1-LOC105375856 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58786090/57873531 (Hg38)
End
58786090/57873531 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375856
Nearest miRNA
hsa-mir-124-1/Upstream/14977256; hsa-mir-10400/Downstream/3841257;
Nearest TSS
ENST00000518652/Upstream/68502; ENST00000522992/Downstream/17278;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/593206, chr8-CpG: 99/Downstream/120860
Nearby gene
LINC01602(No orient, 104827)
Upstream sequence
TCAGAAATTGCTCTGAAATTGTTTCCTACATTTTTTTGAGAGAGAAGCATTGTCTGAAACTATCTCAAGCATTTTATTCTATAGTACAGGAACTATTTTT
Downstream sequence
ATCATAAAGAGAACAATCCCTTTCTTAGAAGGGTACTGATTTAAGGATTAAGATGGGTTAGATTTGGTCGTTTGTTTGTTTTTTTTTTTCCAGAGGAGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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