Basic Information
VIS ID
TVIS44020024
Fusion event
HTLV-1-MCPH1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
6336644/6479123 (Hg38)
End
6336644/6479123 (Hg38)
Orient
+
Location type
Intronic
Target gene
MCPH1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-15b-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-3674/Upstream/4402483; hsa-mir-10400/Downstream/143001;
Nearest TSS
ENST00000518652/Upstream/1764; ENST00000521175/Downstream/83921;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/72322, chr8-CpG: 53/Downstream/87571
Nearest cancer related gene
MCPH1(TSG, No orient, 0)
Upstream sequence
agggtcccaggtggacatattgtttgagcctaggagttcaagaccagcctgggcaacatagcaaaaccttgtgtctacaaaaaaatgcaaaagttagcca
Downstream sequence
gacttggtggtgaattgcctatagtcccaactacttgggaggataaggcaggaggatcacttgagccctggagatcaaggatgcagtgagccatgattgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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