Basic Information
VIS ID
TVIS44020067
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
108827934/106065653 (Hg38)
End
108827934/106065653 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/7836436; hsa-mir-12126/Downstream/535275;
Nearest TSS
ENST00000422679/Upstream/828; ENST00000435485/Downstream/212739;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/370498, chr9-CpG: 55/Downstream/794490
Nearby gene
TMEM38B(+289042) ;
Upstream sequence
tttctcctgacctttttcttgttcttcattcttattttgctcctccttttttccccttactttcccttgcctcttctcatcttttctctccatttctttc
Downstream sequence
ttcttttgtttgcttagttttaaaaattctccttctcattgtcttcctcgcacttgtcctccttGTTCATCTACATTCTCCTCAGGATTGTCAACACCTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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