Basic Information
VIS ID
TVIS44020068
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
10797162/10797162 (Hg38)
End
10797162/10797162 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4789258; hsa-let-7a-1/Downstream/7776144;
Nearest TSS
ENST00000422679/Upstream/164959; ENST00000473763/Downstream/151319;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/183829, chr9-CpG: 37/Downstream/821102
Nearby gene
PTPRD-AS2(No orient, 176742)
Upstream sequence
gtttgttacataggtatacacatttcatggtggtttcctgcactcatcaacccatcatctacattaggaatttctcctaatgctatccctcccctagtcc
Downstream sequence
cccaccacctgacaggccccagtgtgtgatgttcacctccctgtgtccatgtgttctcattgttcaactcacacttatgagtgagaatatgtggtgtttg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate