Basic Information
VIS ID
TVIS44020135
Fusion event
HTLV-1-LINC01410 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
66460690/62804866 (Hg38)
End
66460690/62804866 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA9F
Target gene
LINC01410
Nearest miRNA
hsa-mir-101-2/Upstream/21571031; hsa-let-7a-1/Downstream/8005109;
Nearest TSS
ENST00000422679/Upstream/2790; ENST00000467494/Downstream/33436;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2050, chr9-CpG: 22/Downstream/26130
Upstream sequence
agatacatagtttgtaaatattttttcctcattctataggttgttcactctattgataatttcttttgctgagcagaagcttttaagtttaattagatcc
Downstream sequence
cacttgtcaatagttgtatttgttgtttttggtgtctttatcatgaaatctttgcctctttctatgtccaggatggtattgtctaggttgtcttccagag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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