Basic Information
VIS ID
TVIS44020141
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
6107025/6107025 (Hg38)
End
6107025/6107025 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/99121; hsa-let-7a-1/Downstream/12466281;
Nearest TSS
ENST00000422679/Upstream/59665; ENST00000463336/Downstream/108761;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/98696, chr9-CpG: 178/Downstream/305328
Nearby gene
RANBP6(-91385) ;
Upstream sequence
gtgctggctgtgagctgggataagcagccctgtgggcctgccactgaaacctttgaggacagggcactatttatagctcacttgtgtctatgaggtgggg
Downstream sequence
gcatgatgaagctgtttttgcgaaagttgcaaaaactgcaaattggaatcagctgctgctatggaacggcatgggtgaagaagcactcctggagtgatct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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