Basic Information
VIS ID
TVIS44020142
Fusion event
HTLV-1-CNTNAP3P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
40582211/67110628 (Hg38)
End
40582211/67110628 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTNAP3P2
Nearest miRNA
hsa-mir-101-2/Upstream/25876793; hsa-let-7a-1/Downstream/3699347;
Nearest TSS
ENST00000422679/Upstream/118045; ENST00000616047/Downstream/404765;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/51086, chr9-CpG: 26/Downstream/123486
Nearby gene
SPATA31A3(No orient, 118080)
Upstream sequence
TAAGATTCTCTTTCAATGCTTTCAATGAAATAGGTATCTTACTTTCACTTAGAACATTTTTTTCAAAGTAATTCTTAAAATTCTGTTTTTCTAATAGGTT
Downstream sequence
TGCAGCAATAGGTAGCAATTATTATTATTAGAAACATACCCAGATGCTTTCTTCTCGGCGATACTGCTTCCAGTTTCTCCCACCATCACTGAACATCAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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