Basic Information
VIS ID
TVIS44020151
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
72997790/70382874 (Hg38)
End
72997790/70382874 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/29149039; hsa-let-7a-1/Downstream/427101;
Nearest TSS
ENST00000422679/Upstream/36482; ENST00000436491/Downstream/31750;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/123526, chr9-CpG: 161/Downstream/29540
Nearby gene
KLF9(-1723) ;
Upstream sequence
aaccacttcttctcccaggtgatctcatccacttctttggctccagttactgttaaatatgacgatgacatccaaatttccagtccagtccacttctttt
Downstream sequence
gagatctgaactagtacatacaatcgttctcttgacattcccagttgacaggcactgcaacctcaacatgtccaaagatgaacccatgccctttccctca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate