Basic Information
VIS ID
TVIS44020161
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
84470995/81856080 (Hg38)
End
84470995/81856080 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/11045996; hsa-let-7a-1/Downstream/2113668;
Nearest TSS
ENST00000422679/Upstream/108137; ENST00000419782/Downstream/72434;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/165994, chr9-CpG: 137/Downstream/1206020
Nearby gene
SPATA31D5P(No orient, 57357)
Upstream sequence
AGTCAGGAGACTTAAGTCACGCCAGTCTTCTTGGTGACTTCTTCTACGACCTTCCGTGAGGTGCCTGATGGCTTTGTCCAttttttcttttttcttttga
Downstream sequence
gacggactctcactctgtcgcccaggctggagtgcagtggtgtaatctcggctcactgcaagctctgcctcctgggttcaggccattctcctgcctcagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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