Basic Information
VIS ID
TVIS44020205
Fusion event
HTLV-1-LOC107984272 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
116807469/115047710 (Hg38)
End
116807469/115047710 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LOC107984272
Nearest miRNA
hsa-mir-107/Upstream/873531; hsa-mir-202/Downstream/1779778;
Nearest TSS
ENST00000439456/Upstream/53053; ENST00000526946/Downstream/45655;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/109093, chr10-CpG: 183/Downstream/44792
Nearby gene
ATRNL1(+45655) ;
Upstream sequence
aataatattagataaaataagttaaaataaaaacaaaggaactaattatccccaaactcttccccacctaattattttactatctgtgccttgggattat
Downstream sequence
ttacattgattttatccatatggtgacaatactattcatatataaatggtgtgcttctcttcataactctacatagcctgatgtcaggctagtagcttga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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