Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene116019235116056925116273467116146351
Basic Information
VIS ID
TVIS44020207
Fusion event
HTLV-1-GFRA1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.3
Reference genome
End
117905862/116146351 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-107/Upstream/1972172; hsa-mir-202/Downstream/681137;
Upstream sequence
gggactctctttaagaaaaagaatagagaaatttaaacagaaaaaaatatgatgtgtttataattgtatatgctacatcatcgagtacattcctgatagg
Downstream sequence
agaaccatattagtttgagtaattgtcaatgagactagaatcatttgcttataatttgacatgtttaatgatttgatttattattttccgtagacaagct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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