Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44020207
Proximate region of VIS (GRCh38)
VIS
Enhancer
Enhancer/Promoter
Promoter
Gene
116019235
116056925
116273467
116146351
Basic Information
VIS ID
TVIS44020207
Fusion event
HTLV-1-GFRA1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
117905862/116146351 (Hg38)
End
117905862/116146351 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D
;
FRA10A
;
FRA10B
Target gene
GFRA1
miRNAs that regulate target gene
hsa-mir-148b-3p
;
hsa-mir-7-5p
;
hsa-mir-139-3p
;
hsa-mir-6820-5p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-6760-5p
;
hsa-mir-6873-5p
;
hsa-mir-483-5p
;
hsa-mir-574-5p
;
hsa-mir-6818-5p
;
hsa-mir-6867-5p
;
hsa-mir-542-3p
;
hsa-mir-4504
;
hsa-mir-335-3p
;
hsa-mir-1305
;
hsa-mir-892c-3p
;
hsa-mir-4676-3p
;
hsa-mir-452-5p
;
hsa-mir-548g-3p
;
hsa-mir-4738-3p
;
hsa-mir-7154-3p
;
hsa-mir-6809-3p
;
hsa-mir-4753-3p
;
hsa-mir-942-5p
;
hsa-mir-1248
;
hsa-mir-147a
;
hsa-mir-3925-5p
;
hsa-mir-4289
;
hsa-mir-589-5p
Nearest miRNA
hsa-mir-107/Upstream/1972172; hsa-mir-202/Downstream/681137;
Nearest TSS
ENST00000439456/Upstream/237000;
ENST00000463594/Downstream/125931;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/20833
,
chr10-CpG: 289/Downstream/124716
Upstream sequence
gggactctctttaagaaaaagaatagagaaatttaaacagaaaaaaatatgatgtgtttataattgtatatgctacatcatcgagtacattcctgatagg
Downstream sequence
agaaccatattagtttgagtaattgtcaatgagactagaatcatttgcttataatttgacatgtttaatgatttgatttattattttccgtagacaagct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#2
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate