Basic Information
VIS ID
TVIS44020221
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
130801297/129003033 (Hg38)
End
130801297/129003033 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/3183211; hsa-mir-202/Downstream/840266;
Nearest TSS
ENST00000439456/Upstream/42971; ENST00000414581/Downstream/275218;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/292639, chr10-CpG: 98/Downstream/463651
Nearby gene
MGMT(+464151) ;
Upstream sequence
AAAAGAAGACTCCCCTAACAGCAGAGGCGGGGGCTTTGCTGCAGAGTGTCCCATGGCCAGGAGTGTCTTTGCCTCTTTTTTGGGCTCTTTTTGTCCTTTA
Downstream sequence
CTGGGGCTCCTCCCAGCTGACTTGCCCTGGCATGTCACACTGGCCTACTCTCTCAGGGACGCTTGGGGACAATGCCGAGGGGGCTAAAGCCAATAGTGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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