VISDB Viral Integration Site DataBase

VIS ID

TVIS44020255

Fusion event

HTLV-1-ARHGAP12 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

p11.22

Reference genome

Start

End

32165084/31876156 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-340-5p ; hsa-mir-130b-3p ; hsa-mir-142-3p ; hsa-mir-128-3p ; hsa-mir-181a-5p ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-19b-3p ; hsa-mir-125a-5p ; hsa-mir-199a-5p ; hsa-mir-106b-5p ; hsa-mir-6813-3p ; hsa-mir-3200-3p ; hsa-mir-8485 ; hsa-mir-548aw ; hsa-mir-3192-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3151-3p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-8063 ; hsa-mir-3613-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-551b-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-519d-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-130a-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-19a-3p ; hsa-mir-4721 ; hsa-mir-1226-5p ; hsa-mir-3616-3p ; hsa-mir-545-3p ; hsa-mir-3065-5p ; hsa-mir-330-3p ; hsa-mir-6838-5p ; hsa-mir-4512 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-4517 ; hsa-mir-15a-5p ; hsa-mir-4762-3p ; hsa-mir-6890-3p ; hsa-mir-510-3p ; hsa-mir-377-3p ; hsa-mir-494-3p ; hsa-mir-3658 ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-8087 ; hsa-mir-4432

Nearest miRNA

hsa-mir-1265/Upstream/1507491; hsa-mir-107/Downstream/3203442;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/115661, chr10-CpG: 16/Downstream/51817

Upstream sequence

agttgcttccaccttttggctatagtgaacaattctgctatgaacatggtgtacaaacacctttttgaatccctggcttacagttctttggggtaggtac

Downstream sequence

ccagaGCCCTTCTCTTTTGAAACTCCTCAAATAAAACTTACCTATTGCTCTAAAGGTCATCATAAAAAAAATAACATCAggccgggcacagtggctcacg