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Viral Integration Site DataBase
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TVIS44020266
Basic Information
VIS ID
TVIS44020266
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
34367628/34078700 (Hg38)
End
34367628/34078700 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/3710035; hsa-mir-107/Downstream/1000898;
Nearest TSS
ENST00000439456/Upstream/169462;
ENST00000446211/Downstream/257620;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/741431
,
chr10-CpG: 188/Downstream/735496
Nearby gene
PARD3
(-30860) ;
Upstream sequence
TAGGGCCATATCACAGACTGGGGAGAGAGAATCTTCTGTCTGCAGTCACAAATCAAATGCCTCCATGCCCTGGGAGGAAAATCTGGAAAGACACTTATGT
Downstream sequence
ATTATGACATGCCTGTTGTGAGAAGTGGCCTGATTGTCACTTGGGCGCTGTGCTATTCTCTTATGTCTGCATGGTATATTATCGTACTATAGCCACTCGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#2
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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