Basic Information
VIS ID
TVIS44020278
Fusion event
HTLV-1-MARCH8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
End
46054543/45559095 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1265/Upstream/395007; hsa-mir-107/Downstream/3426417;
Upstream sequence
AGTAAATACATCTTTAAAGAAAGAAAAGGTATAGTTTAAGATGTAGTAATTTATGGCAATTTCAATTATTCAGGAGGAATATGTATTTTAGGAAAGGAAT
Downstream sequence
GAATAACTTTAGCCCTGTCATCATCTGGAAATTAGAAGTTGGTAAACATACCGTAAATCTAacctgcctgtatgcttttcaccttacggctctgggtaag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate