Basic Information
VIS ID
TVIS44020304
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
62865372/61105614 (Hg38)
End
62865372/61105614 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/3801055; hsa-mir-107/Downstream/2267343;
Nearest TSS
ENST00000439456/Upstream/89339; ENST00000389640/Downstream/308886;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/103777, chr10-CpG: 40/Downstream/347123
Nearby gene
LINC00845(No orient, 79197)
Upstream sequence
AAAAAATATTGTAGCCCAGCAgatggtaataagtgttgcaatatgaggggaaggttggaatgatcaagtaattttggaagtactgaattaatttaaatag
Downstream sequence
gattctttatcacatgacttctcaaaacctttaattgttaatgtacatttataaatctctaaagggagatattttacgcagggttttctaaacttattta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate