Basic Information
VIS ID
TVIS44020312
Fusion event
HTLV-1-LOC101928961 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
68655051/66895293 (Hg38)
End
68655051/66895293 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10C
Target gene
LOC101928961
Nearest miRNA
hsa-mir-1265/Upstream/3522245; hsa-mir-107/Downstream/508058;
Nearest TSS
ENST00000439456/Upstream/816050; ENST00000472278/Downstream/30713;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/1840990, chr10-CpG: 39/Downstream/868792
Upstream sequence
TACATTGGGTCTCAAAGTCCCAAAAGCTATGCCCCAATTCTCACACTTTATTGtgtgagacaggaggcatgaattgcagtctttttgttacaaaccagct
Downstream sequence
gtgtcactatatcttgcaagactgcaggtacctcatccgtcaaaCATTGGGTATCAATGGATCTTCAACCAATGCCTTTAAGAGTACTCAAACTTTTATG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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