Basic Information
VIS ID
TVIS44020381
Fusion event
HTLV-1-LINC00167 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
129875109/130005214 (Hg38)
End
129875109/130005214 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
LINC00167
Nearest miRNA
hsa-let-7a-2/Upstream/1482765; hsa-mir-4697/Downstream/661521;
Nearest TSS
ENST00000527297/Upstream/2276; ENST00000461918/Downstream/64623;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1686, chr11-CpG: 47/Downstream/27702
Upstream sequence
TGATGAACTGAGATGGTCCCAACTGAGGTCCACTGACCAGAAACAACACCACAGAACCCAAAAGAGAACGCACCATGGGGAATGGGGCTATTCAAACTGA
Downstream sequence
AGAGCCTGAGTTACTCTCATGGCTTTAGAGAAATGTTCTAAAACTTCTAAGTACATAAATATGTGCAGGGAGATTcctccccacagagtttttattcaga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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