Basic Information
VIS ID
TVIS44020410
Fusion event
HTLV-1-KIF18A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
28050873/28029326 (Hg38)
End
28050873/28029326 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF18A
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-210/Upstream/514279; hsa-let-7a-2/Downstream/27489;
Nearest TSS
ENST00000527297/Upstream/9751; ENST00000403099/Downstream/59254;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/306309, chr11-CpG: 25/Downstream/80990
Upstream sequence
aaaagagaattttagaccaatatccctgaagaacattgatgcaaaaatcctcaataaactactggcaagcccaatccagcagcacatcaaaaagcttatc
Downstream sequence
caccatgagcaagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaatcaataaatgtaatccagcatatacacagaaccaaagacaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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