Basic Information
VIS ID
TVIS44020411
Fusion event
HTLV-1-LINC02546 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
29617343/29595796 (Hg38)
End
29617343/29595796 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02546
Nearest miRNA
hsa-mir-210/Upstream/1118248; hsa-let-7a-2/Downstream/5346041;
Nearest TSS
ENST00000527297/Upstream/878; ENST00000528119/Downstream/23006;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1485122, chr11-CpG: 25/Downstream/420329
Nearby gene
LINC01616(No orient, 384325)
Upstream sequence
tctttgtatggtttagaatcaggataactctggcctcataaaactaaataggaagtgctccttctttctctgttttctgtaagagtgaaagattagtatt
Downstream sequence
aatgatcccttaaatgtttgatagaattaaccagggaagctatctggcccagagtttcctttgtaataaagttttgattatggatttctatttattctta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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