Basic Information
VIS ID
TVIS44020454
Fusion event
HTLV-1-LOC107984341 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
66880087/67112616 (Hg38)
End
66880087/67112616 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
LOC107984341
Nearest miRNA
hsa-mir-10392/Upstream/66908; hsa-let-7a-2/Downstream/377629;
Nearest TSS
ENST00000527297/Upstream/55727; ENST00000532436/Downstream/6653;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/40895, chr11-CpG: 212/Downstream/5188
Nearby gene
KDM2A(+6653) ;
Upstream sequence
cccaccttggcctcccaaagtgctgggattacaggcatgaggcactgtgcAAGACCTCAGAAATCCTTTCTAAAATAAGTTGTCttctagtttccaaagg
Downstream sequence
gtattcatgtccattagtccatttcactccacaacaatcctaggaggaaacagggcaggagtcactacttctgttttaTTtatatacattatatatataa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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