Basic Information
VIS ID
TVIS44020476
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
85393143/85682099 (Hg38)
End
85393143/85682099 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11F
Nearest miRNA
hsa-mir-10392/Upstream/3791263; hsa-let-7a-2/Downstream/596234;
Nearest TSS
ENST00000527297/Upstream/16997; ENST00000529676/Downstream/764;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/16909, chr11-CpG: 40/Downstream/128868
Nearby gene
CCDC89(-1744) ;
Upstream sequence
AAAcaggcccagctacttccttgatagtacccagaacaaaaaataaaatatggggccgcttgttaaaaaataaataagaatttcgcgacagcaacagtga
Downstream sequence
gcattaaaccaggtgtgggggcctGTGTAGGCGGCATACCcagggccttaggttcaaaactcacttttgcctctccaaaccttcctggctttggacaagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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