Basic Information
VIS ID
TVIS44020490
Fusion event
HTLV-1-ANO4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
101377781/100984003 (Hg38)
End
101377781/100984003 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANO4
miRNAs that regulate target gene
hsa-mir-378c
Nearest miRNA
hsa-let-7i/Upstream/794054; hsa-mir-1178/Downstream/2946422;
Nearest TSS
ENST00000382841/Upstream/124741; ENST00000549234/Downstream/3116;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/266159, chr12-CpG: 62/Downstream/225606
Upstream sequence
gtaaccaGAGGAAGACACAAACTGCTGACCATGTTTGAGTGTTTGGTTTAGTCGTAGTGAAGTGCACACAGCATGCACAGCCGTGTGTAATGGAACCTGG
Downstream sequence
ACAACATGCCTTGTCCACCTGCTTCTGCTCAGGCTCCTCAGTGAAGGCCAGTTCACACCCTCCAGCCCCCATGCCCAACCAGTGTCTCGGGGAttttatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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