Basic Information
VIS ID
TVIS44020505
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
113784824/113347019 (Hg38)
End
113784824/113347019 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12E ; FRA12D
Nearest miRNA
hsa-let-7i/Upstream/55411; hsa-mir-1178/Downstream/2801541;
Nearest TSS
ENST00000382841/Upstream/11876; ENST00000548997/Downstream/11547;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/11890, chr12-CpG: 60/Downstream/11393
Nearby gene
PLBD2(+11547) ;
Upstream sequence
ttctccttcctgccaccctgtgaagaggtgccttctgccatgattgtaagtttcctgaggcctccccagccatgccgaactgcgagtcaattaaacctct
Downstream sequence
tttctttataaattactcagtctctggcagttctttataacagtatgaaaatggactaatacaGGGTGCTTTCTGCCTGGGGAGCTCTATCTTTTCAGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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