Basic Information
VIS ID
TVIS44020523
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
131233764/130749219 (Hg38)
End
131233764/130749219 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/2455041; hsa-mir-6763/Downstream/1832778;
Nearest TSS
ENST00000382841/Upstream/32938; ENST00000546264/Downstream/52241;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/33038, chr12-CpG: 56/Downstream/69329
Nearby gene
STX2(-40381) ;
Upstream sequence
gcatggtgtgctgacaggtgccagagatctgggctctggtgaaatcccagcatggcccctgaccagctgtgggaccctgggcaggtcacctaaactctct
Downstream sequence
gggcctcagtttcttcatccataaaacggaatgatgagagcgctgatgccccacaggTATCGACGAAGAGTCGGACTCTGTAAAATATTCGaagcttatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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