Basic Information
VIS ID
TVIS44020532
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
1797100/1687934 (Hg38)
End
1797100/1687934 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/27554; hsa-let-7i/Downstream/5275765;
Nearest TSS
ENST00000382841/Upstream/43137; ENST00000540974/Downstream/640;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/24587, chr12-CpG: 74/Downstream/2774
Nearby gene
ADIPOR2(+3147) ;
Upstream sequence
ATTCTGGTTTTCACTGGCGAAGTAATTTGTCTTTTTTCCTTCTTAAAAATAGATACGATTCTGATAAGAAAAATGATAGCTTGTCTTTTCTCTATAAGAG
Downstream sequence
AAGCAATATAAACCAGTTTCAAACTCAAGTTTAAATTTGCACTGGGATCTAGGGTATTTTTTCTTTCAGAATTTGAAAGTTggctcggtacaatggctca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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