Basic Information
VIS ID
TVIS44020541
Fusion event
HTLV-1-LOC105369685 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
20256366/20103432 (Hg38)
End
20256366/20103432 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369685
Nearest miRNA
hsa-mir-1244-3/Upstream/2430038; hsa-let-7i/Downstream/4108989;
Nearest TSS
ENST00000382841/Upstream/88652; ENST00000542675/Downstream/26381;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/162008, chr12-CpG: 80/Downstream/265796
Nearby gene
LINC02398(+4564) ;
Upstream sequence
tgcagtggtatgatcatggctaactgcagccttgagttgctgagctcaggtgattctcctgcctgagcctcccgtgtagctgtgacttgaagatgtgcca
Downstream sequence
ccatacctggctagttttttatatttttagtagagatggggtttttccatgttgccagactggtctcaaactcctgggttcaagtgttctgcctgccctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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