Basic Information
VIS ID
TVIS44020550
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
31497557/31344623 (Hg38)
End
31497557/31344623 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/5470544; hsa-let-7i/Downstream/10979077;
Nearest TSS
ENST00000382841/Upstream/17565; ENST00000536397/Downstream/24678;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/18175, chr12-CpG: 202/Downstream/245203
Nearby gene
SINHCAF(-18398) ;
Upstream sequence
tgcattgagcccagatcgcaccactgcactccagcctgggaaacagagagtaagactcaaaaaagcaaacaacaacaataaaaaaaGAGTAGTGTGGTct
Downstream sequence
gggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacgaggtcaggagttcaagaccagcctgaccaacatggtgaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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