Basic Information
VIS ID
TVIS44020562
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
41032753/40638951 (Hg38)
End
41032753/40638951 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/14764872; hsa-let-7i/Downstream/1684749;
Nearest TSS
ENST00000382841/Upstream/69326; ENST00000551424/Downstream/53491;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/413840, chr12-CpG: 47/Downstream/53769
Nearby gene
CNTN1(+53491) ;
Upstream sequence
gtgtctgttcacatccttcgcccacttgttgatgggattgtttgattttttcctgagatttgtttaagttctttgtagattctggatattagtcctttgt
Downstream sequence
cagatgggtagattgtaaaaattttcgcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctgtttagtttaattac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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