Basic Information
VIS ID
TVIS44020589
Fusion event
HTLV-1-LOC105369791 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
59337063/58943282 (Hg38)
End
59337063/58943282 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369791
Nearest miRNA
hsa-mir-1228/Upstream/1118590; hsa-let-7i/Downstream/3317077;
Nearest TSS
ENST00000382841/Upstream/22643; ENST00000549465/Downstream/467889;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/22611, chr12-CpG: 76/Downstream/652588
Nearby gene
LRIG3(-22744) ;
Upstream sequence
GAGCTGTGGACTGAGTTGTAATCCTGTTTACTCAGGCTATTTACTATCTCCCAATGATAAAGGATGCAGTAATACCCAAGACTGGCAGAAAAACACAGGA
Downstream sequence
GTGTGAGTAAATAAAACCAAAAATGAGATGTAGGCCCAGGCTTATTAACCCCACAGCAATGAAAAGATGACGACAGAGTCTAGACTTTACTCTCCAAGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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