Basic Information
VIS ID
TVIS44020600
Fusion event
HTLV-1-LOC105369826 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
70580398/70186618 (Hg38)
End
70580398/70186618 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369826
Nearest miRNA
hsa-let-7i/Upstream/601795; hsa-mir-1178/Downstream/9232639;
Nearest TSS
ENST00000382841/Upstream/6280; ENST00000551179/Downstream/35244;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/446839, chr12-CpG: 102/Downstream/56219
Nearby gene
LINC01481(No orient, 35572)
Upstream sequence
AGATGGAAATCATAAGCTAAAATAAAAGGTGAATTCTAAAATGAAATGAGGTCAGAGCCATGTGCCATGATTTTGCAGGTAGTTAAAAATGAACTGAGAA
Downstream sequence
TTCACCATCTGGTGAGAGGCATCTTGGGGAAGCAGCCACCTTCTGTTGGAAATAAATGACATGAAAGCTTGTCGAGCTATTTATTCTTAAGTAGTTGTGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate