Basic Information
VIS ID
TVIS44020652
Fusion event
HTLV-1-LOC105370373 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
113023043/112368729 (Hg38)
End
113023043/112368729 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370373
Nearest miRNA
hsa-mir-1267/Upstream/2027700; hsa-mir-4502/Downstream/894191;
Nearest TSS
ENST00000623511/Upstream/37504; ENST00000414180/Downstream/7590;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/24769, chr13-CpG: 14/Downstream/83294
Nearby gene
SPACA7(+7608) ;
Upstream sequence
gaggcccaatttggacttctggctttcagaactggtaagataataaatcagtgttgttctaaggcactaaatttgcaggaatttgttagagaagcaataa
Downstream sequence
gaaactagttcaGGTGtgaacagacatgttcccaagagggtgcacaggtggcaagcacgcaagaagacgtgagcatcaccagctgttggggaaatgcaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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