Basic Information
VIS ID
TVIS44020654
Fusion event
HTLV-1-USP24P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
19591147/19017007 (Hg38)
End
19591147/19017007 (Hg38)
Orient
-
Location type
Intronic
Target gene
USP24P1
Nearest miRNA
hsa-mir-1267/Downstream/1416771;
Nearest TSS
ENST00000623511/Upstream/8743; ENST00000450212/Downstream/10830;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/141829, chr13-CpG: 18/Downstream/160113
Nearby gene
LINC00442(+4373) ;
Upstream sequence
caaccatttgtcttaatctacttatgacctggaagccccccgccatgctttgagttgtcccacctttctggacaaaaccaatgtccatcttaaacatatt
Downstream sequence
gactgatgtctcacaactcccaacaatgtataaaagcaagctgtaccccagccatcttgggaacatgtcctcaggacctccataggctgtatcacgtccg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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