VISDB Viral Integration Site DataBase

VIS ID

TVIS44020658

Fusion event

HTLV-1-ZDHHC20 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr13

Cytoband

q12.11

Reference genome

Start

End

21996055/21421916 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4775 ; hsa-mir-3607-3p ; hsa-mir-342-3p ; hsa-mir-486-5p ; hsa-mir-4717-3p ; hsa-mir-1285-5p ; hsa-mir-32-3p ; hsa-mir-500a-5p ; hsa-mir-1537-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-30b-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-3606-5p ; hsa-mir-633 ; hsa-mir-642b-5p ; hsa-mir-4670-3p ; hsa-mir-3185 ; hsa-mir-4780 ; hsa-mir-6780b-3p ; hsa-mir-7153-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-3646 ; hsa-mir-519a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3662 ; hsa-mir-574-5p ; hsa-mir-6888-3p ; hsa-mir-6867-5p ; hsa-mir-4711-3p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-3120-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-452-3p ; hsa-mir-3160-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-374c-5p ; hsa-mir-655-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7977 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-7162-3p ; hsa-mir-383-3p

Nearest miRNA

hsa-mir-4499/Upstream/988070; hsa-mir-1267/Downstream/2740500;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/44338, chr13-CpG: 85/Downstream/36807

Upstream sequence

ATCTATCAGATGCTTAAACTCTTTTTCAGTTTGTAATGCAGCACCATAAACCCACTGAAGATAATAAATTCAGACAAGTCTGAAATTCTACTCATTTTTA

Downstream sequence

AAGTTTAGATAAAATGCTACTCCTTCCACAAAGGTCTTTTCTGTTACTTTCAGAATTCATTACTTCTTCATATTGCACTCTCCAAATAATTTGCTTAGAT