Basic Information
VIS ID
TVIS44020663
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.13
Reference genome
GRCh37/hg19
Start
25872939/25298801 (Hg38)
End
25872939/25298801 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/1136297; hsa-mir-1267/Downstream/14365233;
Nearest TSS
ENST00000623511/Upstream/10792; ENST00000481980/Downstream/2637;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/11145, chr13-CpG: 97/Downstream/2055
Nearby gene
NUP58(No orient, 2727)
Upstream sequence
AGTGATTTGGGGATTTATTATGTAGTATAACTTAAAATATTCTGCCAGATACAAGGCAAGAAATGCTACACTAAAATTTTGATAAAGTTGAAAGGATAGT
Downstream sequence
TTGCTTGTTAATTGGAATGGCTTCCCCCAAAACCCAAACTTTAATCTAAGTCAGACTTCCTTTATTTCTTTTataaacgttcagcttcaaaacagttata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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