Basic Information
VIS ID
TVIS44020670
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
29397087/28822950 (Hg38)
End
29397087/28822950 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/4660446; hsa-mir-1267/Downstream/10841084;
Nearest TSS
ENST00000623511/Upstream/2602; ENST00000255289/Downstream/249034;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2189, chr13-CpG: 31/Downstream/516799
Nearby gene
SLC46A3(-103937) ;
Upstream sequence
GAAAAGATGAAAAAAATCTGTACAATATCATAGTTGACTTGCTGAGAAAATGCAAACTGCTATAACCTAGGGCTGTATAGAGCCACTGAAATCAGGCACA
Downstream sequence
TACCTGGAGAACTAGCTCTTTGCCTCGTGATCGCACACACATGGGATTGTTTTGGATCAGTGTGTGAGCTGGAGGTGGAGAAGAGTGGAAACGGGTTGGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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