Basic Information
VIS ID
TVIS44020689
Fusion event
HTLV-1-TRPC4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
38351097/37776960 (Hg38)
End
38351097/37776960 (Hg38)
Orient
+
Location type
Intronic
Target gene
TRPC4
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-140-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p
Nearest miRNA
hsa-mir-2276/Upstream/13614456; hsa-mir-1267/Downstream/1887074;
Nearest TSS
ENST00000623511/Upstream/102590; ENST00000617568/Downstream/6373;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/717131, chr13-CpG: 45/Downstream/92585
Upstream sequence
CATATTTCTATGTCCAGTAGACAGTAATATATTTACTGGAATCCATATCGACTAAGAATCTTCTATATTTTTATTCAGCAGTGTATATTTTGGGTTATAT
Downstream sequence
ATTTGCATTAACATGCTAGTACCAATATCTTACTTCAGACTGTTTGATTTTCTGATCACATAACAGGCAATGTTTCTAAAGACACAATTGTATTAACAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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