Basic Information
VIS ID
TVIS44020703
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.13
Reference genome
GRCh37/hg19
Start
47117349/46543214 (Hg38)
End
47117349/46543214 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/2347014; hsa-mir-1267/Downstream/3453201;
Nearest TSS
ENST00000623511/Upstream/56708; ENST00000478412/Downstream/9954;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/104909, chr13-CpG: 148/Downstream/9621
Nearby gene
LRCH1(+9947) ;
Upstream sequence
GAGCCCCTTGGGGAAGGTGCTGAGTGAAAATCTGGTTAATGTAGCCAACAAACTCAATACTAAAGCCTTGGCCTCCTGATTTTTAACTTAAAGAAGTAAT
Downstream sequence
GAGTTGTTTAATTAGATAATATTTATTCCTGTGTGTGAAACAACTTGAGCTACTCTAAATTCTAGGTATATGGAAGGTGATGGATGACTTAAATGTTACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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