Basic Information
VIS ID
TVIS44020705
Fusion event
HTLV-1-LOC107984559 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
49470008/48895872 (Hg38)
End
49470008/48895872 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984559
Nearest miRNA
hsa-mir-2276/Upstream/4699672; hsa-mir-1267/Downstream/1100543;
Nearest TSS
ENST00000623511/Upstream/189317; ENST00000378383/Downstream/80040;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/362545, chr13-CpG: 132/Downstream/79814
Nearby gene
FNDC3A(+80040) ;
Upstream sequence
ATAAATGAAACATAAAAGACTTAAGGAGGAAAGGAGTAACTACAAAGTAAAATCAAATCtggaaggctgaggcgggcagattgcttgagcccaagagtta
Downstream sequence
gaaacaagcttgggcaacatagggaaagcccatctgtacaaaaagtacaaaaaattagccaggtatggtagcatgcatctggagacacagctattgggga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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