Basic Information
VIS ID
TVIS44020718
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
58854625/58280491 (Hg38)
End
58854625/58280491 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13B ; FRA13C
Nearest miRNA
hsa-mir-1297/Upstream/3105943; hsa-mir-1267/Downstream/2919307;
Nearest TSS
ENST00000623511/Upstream/47374; ENST00000435636/Downstream/1415702;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/645695, chr13-CpG: 52/Downstream/1883035
Nearby gene
LINC00374(No orient, 47374)
Upstream sequence
tcttcaaccagtattcaaactgtgttcaaataagccaaatgccaagctgtaaccaatccagctgtttctacacttcacttccgatttctgtaccttactt
Downstream sequence
tactttttttgtctataaatctggtctgaccacgaaacacccctagagtttctgaatctgctgtgattcttggggctgcccgattcgcgaatcgttcatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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