Basic Information
VIS ID
TVIS44020743
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
69619148/69045016 (Hg38)
End
69619148/69045016 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/2826692; hsa-mir-1267/Downstream/8652996;
Nearest TSS
ENST00000623511/Upstream/159691; ENST00000433664/Downstream/177330;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/59844, chr13-CpG: 42/Downstream/1062584
Nearby gene
LINC00550(No orient, 159691)
Upstream sequence
ttgatttggacagatgtgtaataatggccgggtgtggtggctcaagcatgtaatcccagcactttgggtggccgaggcggacggatcacaaggtcaggag
Downstream sequence
atcgagaccatcgtggctaacacggcgaaactccgtctctactaaaaataaaaaattagcctggcgtggctgcgggcgcctgtagtcccagctactcggg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate